PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G424100.1.p
Common NamePRUPE_ppa015160mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 346aa    MW: 38171.2 Da    PI: 5.5916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G424100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102703101055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Prupe.1G424100.1.p 270 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 310
                         9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-14259326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.926260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-12265321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-11269314No hitNo description
PfamPF000101.3E-7270310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNFEIPASFC PNIPEAEMGL SRVNESFFQH PSDALNSNVH YLSQESCYGN NNHGSAGIFT  60
AILNQENYYF GNSCHVPVAN DISASMDVYM NHHDHDGKSF GSFIPTFSDI VMEGSVSNKE  120
DSGSDRLGFS DDSQPAAIAI PGEELHLKRV HDVAEDKSNN DKSDSNPKKK PRLSKDLHII  180
MQVQKTKKNN ARSKKGEQAN SDVKVKDEEE SNTGADRQST SSCSSEDDNG SQETNGGETS  240
DPKTSSALNL NGKTRANRGS ATDPQSLYAR KRRERINERL RILQNLVPNG TKVDISTMLE  300
EAVHYVKFLQ LQIKLLSSDD MWMYAPIAYN GMDIGLSLQK MSPLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224032.10.0hypothetical protein PRUPE_ppa015160mg
TrEMBLM5XIA20.0M5XIA2_PRUPE; Uncharacterized protein
STRINGGLYMA17G35423.17e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.14e-50ROOT HAIR DEFECTIVE 6-LIKE 2